refactor: 重写PHD解析方法以适配内容各异的文件

This commit is contained in:
Xu Zhimeng 2023-10-09 19:10:06 +08:00
parent a06362f23d
commit 36ba4a8167
3 changed files with 169 additions and 86 deletions

View File

@ -37,6 +37,7 @@ export const showSaveFileModal = (data, ext) => {
* 读文件 * 读文件
* @param {File} file * @param {File} file
* @param { 'arrayBuffer' | 'text' | 'dataURL' | 'binaryString'} fileType * @param { 'arrayBuffer' | 'text' | 'dataURL' | 'binaryString'} fileType
* @returns {Promise<string | ArrayBuffer}
*/ */
export const readFile = (file, fileType = 'text') => { export const readFile = (file, fileType = 'text') => {
return new Promise((resolve, reject) => { return new Promise((resolve, reject) => {
@ -66,8 +67,16 @@ export const readFile = (file, fileType = 'text') => {
export const zipFile = async (fileList, zipName) => { export const zipFile = async (fileList, zipName) => {
const zip = new JSZip() const zip = new JSZip()
const promises = [] const promises = []
const readFileWithName = async file => {
const data = await readFile(file, 'arrayBuffer')
return {
fileName: file.name,
data
}
}
fileList.forEach(file => { fileList.forEach(file => {
promises.push(readFile(file, 'arrayBuffer')) promises.push(readFileWithName(file))
}) })
const result = await Promise.all(promises) const result = await Promise.all(promises)
result.forEach(res => { result.forEach(res => {

View File

@ -1,4 +1,30 @@
/**
* PHD 类型
*/
export const PHD_DATA_TYPE = {
QCPHD: 'QCPHD',
DETBKPHD: 'DETBKPHD',
SAMPLEPHD: 'SAMPLEPHD',
GASBKPHD: 'GASBKPHD'
}
/**
* 判断是不是sample
* @param {*} dataType
* @returns
*/
export const isSample = dataType => {
return ['SAMPLEPHD', 'SPHDP', 'SPHDF'].includes(dataType)
}
export class PHDParser { export class PHDParser {
/**
* 根据Block解析出的结果集
*/
blocks = {
baseInfo: []
}
/** /**
* 数据类型 * 数据类型
*/ */
@ -30,47 +56,97 @@ export class PHDParser {
*/ */
otherFilePrefixes = [] otherFilePrefixes = []
/**
* 该文件是不是sample
*/
isSample = false
/** /**
* 构造函数 * 构造函数
* @param {string} text * @param {string} text
*/ */
constructor(text) { constructor(text) {
const getLine = this.readTextLine(text) this.splitByBlock(text)
const dataTypeLine = getLine(4) this.dataType = this.getBaseInfoByTag('DATA_TYPE')[0]
const fileTypeLine = getLine(6) this.isSample = isSample(this.dataType)
const fileNameLine = getLine(8)
const liveTimeLine = getLine(18)
this.dataType = this.getOnymousData(dataTypeLine)[0] const headerInfo = this.getBlockInfo('Header')
const fileType = this.splitLineText(fileTypeLine) const headerInfoLine1 = this.splitLineText(headerInfo[0])
this.fileType = fileType[2] this.fileType = headerInfoLine1[2]
this.qualify = fileType[4] this.qualify = headerInfoLine1[4]
const liveTime = parseFloat(this.splitLineText(liveTimeLine)[3]).toFixed(1) const liveTime = parseFloat(this.getBlockStr('Acquisition', 0, 3)).toFixed(1)
this.liveTime = liveTime.indexOf('.0') == -1 ? liveTime : liveTime.slice(0, -2) this.liveTime = liveTime.indexOf('.0') == -1 ? liveTime : liveTime.slice(0, -2)
// 如果是 Beta 谱 // 如果解析的是sample 文件,则解析相关联的文件
if (this.fileType == 'B') { if (this.isSample) {
// 如果解析的是sample 文件,则获取其他三个文件 const filePrefixes = this.getFilePrefixes(headerInfo[2])
if (this.dataType == PHD_DATA_TYPE.SAMPLEPHD) { this.sampleFilePrefix = filePrefixes.splice(0, 1)[0]
const filePrefixes = this.getFilePrefixes(fileNameLine) this.otherFilePrefixes = filePrefixes
this.sampleFilePrefix = filePrefixes.splice(0, 1)[0]
this.otherFilePrefixes = filePrefixes
}
} }
} }
/** /**
* 将文本按行分割 * 根据块类型分割
* @param {string} text * @param {string} text
* @returns { (line: number) => string }
*/ */
readTextLine(text) { splitByBlock(text) {
const splited = text.split('\n') const lines = (text = text.replace(/\r{0,1}\n/g, '\n').split('\n'))
return line => { let blockType = 'baseInfo'
return splited[line - 1] for (const line of lines) {
// 如果以#开头
if (line.startsWith('#')) {
blockType = line.slice(1)
if (blockType.startsWith('Header')) {
blockType = 'Header'
}
this.blocks[blockType] = []
continue
}
this.blocks[blockType].push(line.trim())
} }
} }
/**
* 根据块名拿到块内容
* @param {string} blockName
* @returns {Array<string>}
*/
getBlockInfo(blockName) {
return this.blocks[blockName]
}
/**
* 在baseInfo中根据tag查找值
* @param {*} tag
* @returns {Array<string>}
*/
getBaseInfoByTag(tag) {
const baseInfo = this.getBlockInfo('baseInfo')
const map = new Map()
baseInfo.forEach(line => {
if (line.startsWith(tag)) {
map.set(tag, this.getOnymousData(line))
}
})
return map.get(tag)
}
/**
* 根据行号和位置在block中查找字符
* @param {string} blockName
* @param {number} lineNum
* @param {number} index
* @returns {string}
*/
getBlockStr(blockName, lineNum, index) {
const blockInfo = this.getBlockInfo(blockName)
const lineText = blockInfo[lineNum]
const splited = this.splitLineText(lineText)
return splited[index]
}
/** /**
* 获取 具名 行的数据 * 获取 具名 行的数据
* @param {string} text * @param {string} text
@ -98,19 +174,9 @@ export class PHDParser {
const filePrefixes = unHandledfilePrefixes const filePrefixes = unHandledfilePrefixes
.filter(filePrefix => filePrefix) .filter(filePrefix => filePrefix)
.map(filePrefix => { .map(filePrefix => {
filePrefix = filePrefix.replace(/(\d{4})\/(\d{2})\/(\d{2})-(\d{2}):(\d{2})/, '$1$2$3_$4$5') filePrefix = filePrefix.replace(/(\d{4})\/(\d{2})\/(\d{2})-(\d{2}):(\d{2})(:\d{2}\.\d)?/, '$1$2$3_$4$5')
return filePrefix + '_' return filePrefix + '_'
}) })
return filePrefixes return filePrefixes
} }
} }
/**
* PHD 类型
*/
export const PHD_DATA_TYPE = {
QCPHD: 'QCPHD',
DETBKPHD: 'DETBKPHD',
SAMPLEPHD: 'SAMPLEPHD',
GASBKPHD: 'GASBKPHD'
}

View File

@ -205,7 +205,7 @@
import { getAction, postAction } from '../../../../api/manage' import { getAction, postAction } from '../../../../api/manage'
import { FilePicker } from '@/utils/FilePicker' import { FilePicker } from '@/utils/FilePicker'
import { readFile, zipFile } from '@/utils/file' import { readFile, zipFile } from '@/utils/file'
import { PHDParser, PHD_DATA_TYPE } from '@/utils/phdHelper' import { isSample, PHDParser, PHD_DATA_TYPE } from '@/utils/phdHelper'
import ModalMixin from '@/mixins/ModalMixin' import ModalMixin from '@/mixins/ModalMixin'
const columns = [ const columns = [
@ -417,57 +417,66 @@ export default {
fileName: `${sampleFilePrefix}S_${qualify}_${liveTime}.PHD`, fileName: `${sampleFilePrefix}S_${qualify}_${liveTime}.PHD`,
} }
const iter = await this.directoryHanlder.values() // Beta Gamma
const fileList = [] if (phdParser.fileType == 'B') {
const iter = await this.directoryHanlder.values()
const fileList = []
let result = await iter.next() let result = await iter.next()
while (!result.done) { while (!result.done) {
const fileHandle = result.value const fileHandle = result.value
const file = await fileHandle.getFile() const file = await fileHandle.getFile()
fileList.push(file) fileList.push(file)
result = await iter.next() result = await iter.next()
} }
const nameKeys = ['detFileName', 'gasFileName'] const nameKeys = ['detFileName', 'gasFileName']
const fileTypes = ['D', 'G'] const fileTypes = ['D', 'G']
otherFilePrefixes.forEach((otherFilePrefix, index) => { otherFilePrefixes.forEach((otherFilePrefix, index) => {
const fileType = fileTypes[index] const fileType = fileTypes[index]
// sample // sample
const findFile = fileList.find((file) => { const findFile = fileList.find((file) => {
return file.name.includes(`${otherFilePrefix}${fileType}_${qualify}`) return file.name.includes(`${otherFilePrefix}${fileType}_${qualify}`)
})
if (findFile) {
record[nameKeys[index]] = {
file: findFile,
fileName: findFile.name,
}
} else {
record[nameKeys[index]] = {
file: undefined,
fileName: `${otherFilePrefix}${fileType}.PHD`,
}
}
}) })
if (findFile) { // QC
record[nameKeys[index]] = { let qcFileInfo = {
file: findFile, file: undefined,
fileName: findFile.name, fileName: `${sampleFilePrefix}Q.PHD`,
} }
} else { const qcFileList = fileList.filter((file) => file.name.includes('_Q_'))
record[nameKeys[index]] = { for (const qcFile of qcFileList) {
file: undefined, if (qcFile.name.slice(0, 23) <= sampleFilePrefix) {
fileName: `${otherFilePrefix}${fileType}.PHD`, qcFileInfo = {
file: qcFile,
fileName: qcFile.name,
}
} else {
break
} }
} }
}) record.qcFileName = qcFileInfo
} else {
// QC Object.assign(record, {
let qcFileInfo = { gasFileName: undefined,
file: undefined, detFileName: undefined,
fileName: `${sampleFilePrefix}Q.PHD`, qcFileName: undefined,
})
} }
const qcFileList = fileList.filter((file) => file.name.includes('_Q_'))
for (const qcFile of qcFileList) {
if (qcFile.name.slice(0, 23) <= sampleFilePrefix) {
qcFileInfo = {
file: qcFile,
fileName: qcFile.name,
}
} else {
break
}
}
record.qcFileName = qcFileInfo
} }
// sample // sample
else { else {
@ -491,8 +500,7 @@ export default {
let currDataType = '' let currDataType = ''
switch (column) { switch (column) {
case 'sampleFileName': case 'sampleFileName':
currDataType = PHD_DATA_TYPE.SAMPLEPHD return isSample(dataType)
break
case 'gasFileName': case 'gasFileName':
currDataType = PHD_DATA_TYPE.GASBKPHD currDataType = PHD_DATA_TYPE.GASBKPHD
break break
@ -628,7 +636,7 @@ export default {
} }
}) })
} }
if(!files.length) { if (!files.length) {
this.$message.warn('File is Empty ') this.$message.warn('File is Empty ')
return return
} }