xiaoguangbin/AnalysisSystemForRadionuclide
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Merge remote-tracking branch 'origin/station' into station

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This commit is contained in:
nieziyan 2023-10-30 16:23:19 +08:00
commit bc59a15887
7 changed files with 696 additions and 1375 deletions
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5
jeecg-boot-base-core/src/main/java/org/jeecg/common/properties/ParameterProperties.java
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@ -11,6 +11,11 @@ import java.io.Serializable;
@ConfigurationProperties(prefix = "parameter")
public class ParameterProperties implements Serializable {
/**
* 分析后生成的日志文件路径
*/
private String logFilePath;
/**
* 算法计算需要用到的文件存储路径
*/

2
jeecg-boot-base-core/src/main/java/org/jeecg/modules/entity/vo/AnalyseData.java
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@ -12,6 +12,8 @@ public class AnalyseData implements Serializable {
private String currentFileName;
private String currentQCFileName;
private boolean sampleData;
private boolean gasBgData;

1941
jeecg-module-spectrum-analysis/src/main/java/org/jeecg/common/util/PHDFileUtil.java
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File diff suppressed because it is too large Load Diff

4
jeecg-module-spectrum-analysis/src/main/java/org/jeecg/modules/controller/SpectrumAnalysesController.java
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@ -216,8 +216,8 @@ public class SpectrumAnalysesController {
@GetMapping("viewBGLogViewer")
@ApiOperation(value = "查看BG Log Viewer数据", notes = "查看BG Log Viewer数据")
public Result viewBGLogViewer(String dbName, Integer sampleId, String sampleFileName, String gasFileName, String detFileName, String qcFileName, HttpServletRequest request) {
return null;
public void viewBGLogViewer(String sampleFileName, HttpServletResponse response) {
spectrumAnalysisService.viewBGLogViewer(sampleFileName, response);
}
@PostMapping("saveToDB")

2
jeecg-module-spectrum-analysis/src/main/java/org/jeecg/modules/service/ISpectrumAnalysisService.java
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@ -76,7 +76,7 @@ public interface ISpectrumAnalysisService {
void viewAutomaticAnalysisLog(Integer sampleId, HttpServletResponse response);
Result viewBGLogViewer(String dbName, Integer sampleId, String sampleFileName, String gasFileName, String detFileName, String qcFileName, HttpServletRequest request);
void viewBGLogViewer(String sampleFileName, HttpServletResponse response);
Result saveToDB(BgDataAnlyseResultIn anlyseResultIn, HttpServletRequest request);

3
jeecg-module-spectrum-analysis/src/main/java/org/jeecg/modules/service/impl/GammaServiceImpl.java
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@ -2519,6 +2519,7 @@ public class GammaServiceImpl extends AbstractLogOrReport implements IGammaServi
try {
// 设置响应类型
response.setContentType("application/octet-stream");
response.setHeader("Access-Control-Expose-Headers", "Content-Disposition");
// 解决中文不能生成文件
response.setHeader("Content-Disposition", "attachment; fileName=" + URLEncoder.encode("EnergyCalibration.Ent", "UTF-8"));
fos = response.getOutputStream();
@ -2792,6 +2793,7 @@ public class GammaServiceImpl extends AbstractLogOrReport implements IGammaServi
try {
// 设置响应类型
response.setContentType("application/octet-stream");
response.setHeader("Access-Control-Expose-Headers", "Content-Disposition");
// 解决中文不能生成文件
response.setHeader("Content-Disposition", "attachment; fileName=" + URLEncoder.encode("ResolutionCalibration.Ent", "UTF-8"));
fos = response.getOutputStream();
@ -3075,6 +3077,7 @@ public class GammaServiceImpl extends AbstractLogOrReport implements IGammaServi
try {
// 设置响应类型
response.setContentType("application/octet-stream");
response.setHeader("Access-Control-Expose-Headers", "Content-Disposition");
// 解决中文不能生成文件
response.setHeader("Content-Disposition", "attachment; fileName=" + URLEncoder.encode("EfficiencyCalibration.Eft", "UTF-8"));
fos = response.getOutputStream();

114
jeecg-module-spectrum-analysis/src/main/java/org/jeecg/modules/service/impl/SpectrumAnalysisServiceImpl.java
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@ -24,6 +24,7 @@ import org.jeecg.common.api.vo.Result;
import org.jeecg.common.cache.BetaCache;
import org.jeecg.common.constant.DateConstant;
import org.jeecg.common.constant.SymbolConstant;
import org.jeecg.common.properties.ParameterProperties;
import org.jeecg.common.properties.SpectrumPathProperties;
import org.jeecg.common.system.util.JwtUtil;
import org.jeecg.common.system.vo.LoginUser;
@ -57,6 +58,7 @@ import javax.servlet.ServletOutputStream;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import java.io.*;
import java.net.URLEncoder;
import java.sql.*;
import java.text.ParseException;
import java.time.LocalDateTime;
@ -83,6 +85,8 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
@Autowired
private SpectrumPathProperties spectrumPathProperties;
@Autowired
private ParameterProperties parameterProperties;
@Autowired
private UserTaskUtil userTaskUtil;
@Autowired
private PHDFileUtil phdFileUtil;
@ -3103,6 +3107,7 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
} else if ("AllSpectrum".equals(analyseData.getApplyType())) {
//获取当前选中的文件名称
String currentFileName = analyseData.getCurrentFileName();
String currentQCFileName = analyseData.getCurrentQCFileName();
List<Map<String, String>> loadDataList = new LinkedList<>();
for (int i=0; i<analyseData.getSampleIds().size(); i++) {
Map<String, String> m_loadData = new HashMap<>();
@ -3154,7 +3159,7 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
m_loadData.put("qcFileName", qcFileName);
loadDataList.add(m_loadData);
}
List<GardsXeResultsSpectrum> analyseResultList = BetaGammaAnalyzeAllProcess(loadDataList, analyseData, userName, currentFileName);
List<GardsXeResultsSpectrum> analyseResultList = BetaGammaAnalyzeAllProcess(loadDataList, analyseData, userName, currentFileName, currentQCFileName);
map.put("XeData", analyseResultList);
map.put("bProcessed", true);
map.put("savedAnalysisResult", true);
@ -3284,6 +3289,12 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
detTmp = phdFileUtil.analyzeFile(detFilePath, detFileName);
//调用重新分析算法 获取算法结果
BgAnalyseResult analyseResult = EnergySpectrumHandler.bgReAnalyse(sampleTmp.getAbsolutePath(), gasTmp.getAbsolutePath(), detTmp.getAbsolutePath(), spectrum_group.BgCalPara);
//生成分析操作日志
EnergySpectrumStruct sample = phdFileUtil.analyzeFileSourceData(sampleTmp);
EnergySpectrumStruct gas = phdFileUtil.analyzeFileSourceData(gasTmp);
EnergySpectrumStruct det = phdFileUtil.analyzeFileSourceData(detTmp);
String logName = sampleFileName.replace("PHD", "log");
phdFileUtil.OutPutRnLog(analyseResult, sample, gas, det, logName);
//存入分析用到的数据
map.put("reAnalyseParam", spectrum_group.BgCalPara);
//存入计算后得到的xeData数据
@ -3385,7 +3396,7 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
return xeResultsSpectrumList;
}
private List<GardsXeResultsSpectrum> BetaGammaAnalyzeAllProcess(List<Map<String, String>> loadDataList, AnalyseData analyseData, String userName, String currentFileName){
private List<GardsXeResultsSpectrum> BetaGammaAnalyzeAllProcess(List<Map<String, String>> loadDataList, AnalyseData analyseData, String userName, String currentFileName, String currentQCFileName){
Map<String, List<GardsXeResultsSpectrum>> analyseResultMap = new HashMap<>();
File sampleTmp = null;
File gasTmp = null;
@ -3409,7 +3420,7 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
//从本地缓存获取beta gamma的数组
Cache<String, Map<String, Object>> cache = betaCache.getBetaCache();
//根据qc文件名称-用户名-beta的方式获取beta的内容
Map<String, Object> betaMap = cache.getIfPresent(qcFileName + "-" + userName + "-beta");
Map<String, Object> betaMap = cache.getIfPresent(currentQCFileName + "-" + userName + "-beta");
List<SeriseData> betaList = new LinkedList<>();
List<String> betaFittingPara = new LinkedList<>();
List<String> betaFittingParaToUi = new LinkedList<>();
@ -3417,9 +3428,10 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
betaList = (List<SeriseData>)betaMap.get("Series");
betaFittingPara = (List<String>) betaMap.get("fittingPara");
betaFittingParaToUi = (List<String>) betaMap.get("fittingParaToUi");
cache.put(qcFileName+ "-" + userName + "-beta", betaMap);
}
//根据qc文件名称-用户名-gamma的方式获取gamma的内容
Map<String, Object> gammaMap = cache.getIfPresent(qcFileName + "-" + userName + "-gamma");
Map<String, Object> gammaMap = cache.getIfPresent(currentQCFileName + "-" + userName + "-gamma");
List<SeriseData> gammaList = new LinkedList<>();
List<String> gammaFittingPara = new LinkedList<>();
List<String> gammaFittingParaToUi = new LinkedList<>();
@ -3427,6 +3439,7 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
gammaList = (List<SeriseData>)gammaMap.get("Series");
gammaFittingPara = (List<String>) gammaMap.get("fittingPara");
gammaFittingParaToUi = (List<String>) gammaMap.get("fittingParaToUi");
cache.put(qcFileName+ "-" + userName + "-gamma", gammaMap);
}
if (analyseData.isBetaEnergyValid()) {
@ -3491,6 +3504,12 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
gasTmp = phdFileUtil.analyzeFile(gasFilePath, gasFileName);
detTmp = phdFileUtil.analyzeFile(detFilePath, detFileName);
BgAnalyseResult analyseResult = EnergySpectrumHandler.bgReAnalyse(sampleTmp.getAbsolutePath(), gasTmp.getAbsolutePath(), detTmp.getAbsolutePath(), spectrum_group.BgCalPara);
//生成分析操作日志
EnergySpectrumStruct sample = phdFileUtil.analyzeFileSourceData(sampleTmp);
EnergySpectrumStruct gas = phdFileUtil.analyzeFileSourceData(gasTmp);
EnergySpectrumStruct det = phdFileUtil.analyzeFileSourceData(detTmp);
String logName = sampleFileName.replace("PHD", "log");
phdFileUtil.OutPutRnLog(analyseResult, sample, gas, det, logName);
//存入重新分析的参数
map.put("reAnalyseParam", spectrum_group.BgCalPara);
//存入xeData数据
@ -3923,75 +3942,34 @@ public class SpectrumAnalysisServiceImpl implements ISpectrumAnalysisService {
}
@Override
public Result viewBGLogViewer(String dbName, Integer sampleId, String sampleFileName, String gasFileName, String detFileName, String qcFileName, HttpServletRequest request) {
Result result = new Result();
//获取用户名
String userName = JwtUtil.getUserNameByToken(request);
//从本地缓存获取beta gamma的数组
Cache<String, Map<String, Object>> cache = betaCache.getBetaCache();
//拼接ftp上传临时文件路径
String path = StringPool.SLASH + spectrumPathProperties.getUploadPath() + StringPool.SLASH + userName;
//声明一个实体类获取数据库中文件路径
SpectrumFileRecord dbSpectrumFilePath = new SpectrumFileRecord();
Integer analysisID = null;
String samplePath = "";
String gasPath = "";
String detPath = "";
String qcPath = "";
File sampleTmp = null;
File gasTmp = null;
File detTmp = null;
BgCalibratePara BgCalPara = null;
public void viewBGLogViewer(String sampleFileName, HttpServletResponse response) {
//日志路径及名称
String logFilePath = parameterProperties.getLogFilePath() + File.separator + DateUtils.formatDate(new Date(), "yyyy-MM-dd") + File.separator + sampleFileName.replace("PHD", "log");
FileInputStream inputStream = null;
OutputStream fos = null;
try {
//如果sampleId不为空 说明数据来源数据库 查询出对应的文件路径
if (Objects.nonNull(sampleId) && StringUtils.isNotBlank(dbName)){
if (dbName.equalsIgnoreCase("auto")){
dbName = "RNAUTO";
analysisID = spectrumAnalysisMapper.getAnalysisID(dbName, sampleId, "RNAUTO");
} else if (dbName.equalsIgnoreCase("man")){
dbName = "RNMAN";
analysisID = spectrumAnalysisMapper.getAnalysisID(dbName, sampleId, userName);
}
dbSpectrumFilePath = spectrumAnalysisMapper.getDBSpectrumFilePath(dbName, sampleId, analysisID);
samplePath = StringPool.SLASH + spectrumPathProperties.getSaveFilePath() + StringPool.SLASH + dbSpectrumFilePath.getSampleFilePath().substring(0, dbSpectrumFilePath.getSampleFilePath().lastIndexOf(StringPool.SLASH));
gasPath = StringPool.SLASH + spectrumPathProperties.getSaveFilePath() + StringPool.SLASH + dbSpectrumFilePath.getGasBgFilePath().substring(0, dbSpectrumFilePath.getGasBgFilePath().lastIndexOf(StringPool.SLASH));
detPath = StringPool.SLASH + spectrumPathProperties.getSaveFilePath() + StringPool.SLASH + dbSpectrumFilePath.getDetBgFilePath().substring(0, dbSpectrumFilePath.getDetBgFilePath().lastIndexOf(StringPool.SLASH));
GardsSampleData sampleData = spectrumAnalysisMapper.getSampleData(sampleId);
String collectStartStr = DateUtils.formatDate(sampleData.getCollectStart(), "yyyy/MM/dd HH:mm:ss");
String dbQcFilePath = spectrumAnalysisMapper.getQCFilePath(sampleData.getSiteDetCode(), collectStartStr);
if (StringUtils.isNotBlank(dbQcFilePath)) {
qcPath=StringPool.SLASH + spectrumPathProperties.getSaveFilePath() + StringPool.SLASH + dbQcFilePath.substring(0, dbQcFilePath.lastIndexOf(StringPool.SLASH));
}
} else if ( (Objects.isNull(sampleId) && StringUtils.isNotBlank(dbName)) || (Objects.nonNull(sampleId) && StringUtils.isBlank(dbName)) ){
result.error500("Data load From DB need to pass in sampleId and dbName");
return result;
} else {//如果sampleId,dbNamed都为空 就指向ftp上传文件临时路径
samplePath = path;
gasPath = path;
detPath = path;
qcPath = path;
inputStream = new FileInputStream(new File(logFilePath));
fos = response.getOutputStream();
byte[] buffer = new byte[1024];
int bytesRead;
// 将文件输出流写入到输出流中
while ((bytesRead = inputStream.read(buffer)) != -1) {
fos.write(buffer, 0, bytesRead);
}
//根据文件路径 文件名称获取对应的临时文件
sampleTmp = phdFileUtil.analyzeFile(samplePath, sampleFileName);
gasTmp = phdFileUtil.analyzeFile(gasPath, gasFileName);
detTmp = phdFileUtil.analyzeFile(detPath, detFileName);
//调用动态库解析文件
//Gamma Energy Calibration页面 如果点击过fitting使BGammaEnergyValid并且有勾选
//如果三个sampleData,GasData,DetData数据都是被勾选状态 则需要传递新的参数重新分析 否则不需要改变数据分析当前文件内容
BgAnalyseResult bgAnalyseResult = null;
if (Objects.isNull(BgCalPara)) {
bgAnalyseResult = EnergySpectrumHandler.bgAnalyse(sampleTmp.getAbsolutePath(), gasTmp.getAbsolutePath(), detTmp.getAbsolutePath());
} else {
bgAnalyseResult = EnergySpectrumHandler.bgReAnalyse(sampleTmp.getAbsolutePath(), gasTmp.getAbsolutePath(), detTmp.getAbsolutePath(), BgCalPara);
}
//拿分析的结果去生成日志内容
} catch (Exception e) {
e.printStackTrace();
} finally {
try {
if (Objects.nonNull(inputStream)) {
inputStream.close();
}
if (Objects.nonNull(fos)) {
fos.close();
}
} catch (IOException e) {
throw new RuntimeException(e);
}
}
return result;
}
@Override