From bc1d9fb90a69fcbf85fe22b10208157c3f0933a3 Mon Sep 17 00:00:00 2001
From: qiaoqinzheng <qiaoqinzheng@hivekion.com>
Date: Mon, 16 Oct 2023 17:18:32 +0800
Subject: [PATCH] =?UTF-8?q?GammaFileUtil=E9=81=97=E6=BC=8FwriteFile?=
 =?UTF-8?q?=E6=96=B9=E6=B3=95=E8=B0=83=E7=94=A8=E9=97=AE=E9=A2=98=E4=BF=AE?=
 =?UTF-8?q?=E6=94=B9?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
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---
 .../org/jeecg/common/util/GammaFileUtil.java  | 215 ++++++++++--------
 1 file changed, 121 insertions(+), 94 deletions(-)

diff --git a/jeecg-module-beta-gamma-analyser/src/main/java/org/jeecg/common/util/GammaFileUtil.java b/jeecg-module-beta-gamma-analyser/src/main/java/org/jeecg/common/util/GammaFileUtil.java
index 611942c5..eca66462 100644
--- a/jeecg-module-beta-gamma-analyser/src/main/java/org/jeecg/common/util/GammaFileUtil.java
+++ b/jeecg-module-beta-gamma-analyser/src/main/java/org/jeecg/common/util/GammaFileUtil.java
@@ -601,8 +601,6 @@ public class GammaFileUtil extends AbstractLogOrReport {
     }
 
     public void RunQC(PHDFile phd) {
-        //调用dll库
-        //System.loadLibrary("GammaAnaly");
         try {
             //获取phdFile的 采集开始时间
             Date start = DateUtils.parseDate(phd.getCollect().getCollection_start_date() + StringPool.SPACE + phd.getCollect().getCollection_start_time());
@@ -747,7 +745,6 @@ public class GammaFileUtil extends AbstractLogOrReport {
     }
 
     public Double CalculateMDC(PHDFile phd, List<Double> vMdcInfo, Double CCF) {
-        //System.loadLibrary("GammaAnaly");
         try {
             //判断用于计算的数据大小是否小于3  判断集合中最后一个数值是否等于0
             if(vMdcInfo.size() < 3 || vMdcInfo.get(2) == 0) {
@@ -2518,14 +2515,14 @@ public class GammaFileUtil extends AbstractLogOrReport {
         strBuffer.append(System.lineSeparator());
         //文本内容第十二部分数据
         String data1 = String.format("%s peaks reported", String.valueOf(middleData.peaks_idPeak.size()));
-        String data2 = String.format("%s peaks with ID (%s%)", String.valueOf(peaksUsed), String.valueOf(peaksUsed / middleData.peaks_idPeak.size() * 100));
-        String data3 = String.format("%s peaks without ID(%s%)", String.valueOf(middleData.peaks_idPeak.size() - peaksUsed), String.valueOf(Double.valueOf(middleData.peaks_idPeak.size() - peaksUsed) / middleData.peaks_idPeak.size() * 100));
+        String data2 = String.format("%s peaks with ID (%s%%)", String.valueOf(peaksUsed), String.valueOf(peaksUsed / middleData.peaks_idPeak.size() * 100 ) );
+        String data3 = String.format("%s peaks without ID(%s%%)", String.valueOf(middleData.peaks_idPeak.size() - peaksUsed), String.valueOf(Double.valueOf(middleData.peaks_idPeak.size() - peaksUsed) / middleData.peaks_idPeak.size() * 100));
         String[] dataTitle12 = new String[]{data1, data2, data3};
         String[] dataContent12 = new String[]{"", "", ""};
         strBuffer.append(attributeFormat(dataTitle12, dataContent12));
         //文本内容第十三部分数据
+        String data14= "PeakID : %-7s Energy : %-13s Centroid : %-13s FWHM : %-10s NetArea : %-16s NAErr%% : %-23s Signif : %-13s Sensit : %-13s Nuclide : %-30s";
         for (int i=0; i<middleData.peaks_idPeak.size();i++){
-            String data14= "PeakID : %-7sEnergy : %-13sCentroid : %-13sFWHM : %-10sNetArea : %-16sNAErr% : %-23sSignif : %-13sSensit : %-13sNuclide : %-30s";
             String idPeak = middleData.peaks_idPeak.get(i);
             String energy = middleData.peaks_Energy.get(i);
             String peakCentroid = String.format("%.3f", Double.valueOf(middleData.peaks_peakCentroid.get(i)));
@@ -2566,8 +2563,8 @@ public class GammaFileUtil extends AbstractLogOrReport {
         //换行
         strBuffer.append(System.lineSeparator());
         //文本内容第十五部分数据
+        String data15 = "Nuclide : %-11s Halflife : %-20s Activity : %-14s RelErr : %-12s Conc : %-24s MDC : %-17s";
         for (int i=0;i<middleData.nucl_ided_Nuclidename.size();i++){
-            String data15 = "Nuclide : %-11sHalflife : %-20sActivity : %-14sRelErr : %-12sConc : %-24sMDC : %-17s";
             String nuclideName = middleData.nucl_ided_Nuclidename.get(i);
             String halflife = middleData.nucl_ided_Halflife.get(i);
             String activity = String.format("%.3f", Double.valueOf(middleData.nucl_ided_activ_key.get(i))) + " bq";
@@ -2589,7 +2586,7 @@ public class GammaFileUtil extends AbstractLogOrReport {
         strBuffer.append(System.lineSeparator());
         //日志文本内容第十六部分数据
         for (int i=0; i<middleData.QC_CHECK_QC_NAME.size();i++){
-            String data16 = "Name : %-15sPass/Fail : %-9sValue : %-14sTest : %-16s";
+            String data16 = "Name : %-15s Pass/Fail : %-9s Value : %-14s Test : %-16s";
             String qcName = middleData.QC_CHECK_QC_NAME.get(i);
             String qcResult = middleData.QC_CHECK_QC_RESULT.get(i).equals("0") ? "Fail" : "Pass";
             String qcValue = String.format("%.3f", Double.valueOf(middleData.QC_CHECK_QC_VALUE.get(i)));
@@ -3110,6 +3107,9 @@ public class GammaFileUtil extends AbstractLogOrReport {
         String qsSaveBaseLine = StringPool.SLASH+spectrumPathProperties.getRootPath()+StringPool.SLASH+qsBaseLinePath;
         String qsSaveLc = StringPool.SLASH+spectrumPathProperties.getRootPath()+StringPool.SLASH+qsLcPath;
         String qsSaveScac = StringPool.SLASH+spectrumPathProperties.getRootPath()+StringPool.SLASH+qsScacPath;
+        GammaReportUtil.writeFile(fileAnlyse.getBaseCtrls(), qsSaveBaseLine);
+        GammaReportUtil.writeFile(fileAnlyse.getVLc(), "LC", qsSaveLc);
+        GammaReportUtil.writeFile(fileAnlyse.getVScac(), "SCSC", qsSaveScac);
 //        WriteBaseInfo(fileAnlyse.getBaseCtrls(),qsSaveBaseLine);
 //        WriteLcScac(fileAnlyse.getVLc(),"Lc",qsSaveLc);
 //        WriteLcScac(fileAnlyse.getVScac(),"Scac",qsSaveScac);
@@ -4359,30 +4359,33 @@ public class GammaFileUtil extends AbstractLogOrReport {
         }
 
         // Certificate
-        if(CollectionUtils.isNotEmpty(phd.getCertificate().getG_energy())) {
-            spectrum.append("#Certificate");
-            //换行
-            spectrum.append(System.lineSeparator());
-            spectrum.append(phd.getCertificate().getTotal_source_activity());
-            spectrum.append(phd.getCertificate().getAssay_date());
-            spectrum.append(phd.getCertificate().getAssay_time());
-            spectrum.append(phd.getCertificate().getUnits_activity());
-            //换行
-            spectrum.append(System.lineSeparator());
-            String certificate = "%-12s %-12s %-12s %-12s %-12s %-12s %-12s %-12s %-12s %-12s";
-            for(int i=0; i<phd.getCertificate().getG_energy().size(); i++) {
-                String nuclide_name = phd.getCertificate().getNuclide_name().get(i);
-                String half_life_time = phd.getCertificate().getHalf_life_time().get(i);
-                String time_unit = phd.getCertificate().getTime_unit().get(i);
-                String activity_nuclide_time_assay = String.valueOf(phd.getCertificate().getActivity_nuclide_time_assay().get(i));
-                String uncertainty = String.valueOf(phd.getCertificate().getUncertainty().get(i));
-                String g_energy = String.valueOf(phd.getCertificate().getG_energy().get(i));
-                String g_intensity = String.valueOf(phd.getCertificate().getG_intensity().get(i));
-                String electron_decay_mode = phd.getCertificate().getElectron_decay_mode().get(i);
-                String maximum_energy = String.valueOf(phd.getCertificate().getMaximum_energy().get(i));
-                String intensity_b_particle = String.valueOf(phd.getCertificate().getIntensity_b_particle().get(i));
-                spectrum.append(rowFormat(certificate, nuclide_name, half_life_time, time_unit, activity_nuclide_time_assay, uncertainty, g_energy, g_intensity, electron_decay_mode, maximum_energy, intensity_b_particle));
+        CertificateBlock phdCertificate = phd.getCertificate();
+        if (Objects.nonNull(phdCertificate)) {
+            if(CollectionUtils.isNotEmpty(phd.getCertificate().getG_energy())) {
+                spectrum.append("#Certificate");
+                //换行
                 spectrum.append(System.lineSeparator());
+                spectrum.append(phd.getCertificate().getTotal_source_activity());
+                spectrum.append(phd.getCertificate().getAssay_date());
+                spectrum.append(phd.getCertificate().getAssay_time());
+                spectrum.append(phd.getCertificate().getUnits_activity());
+                //换行
+                spectrum.append(System.lineSeparator());
+                String certificate = "%-12s %-12s %-12s %-12s %-12s %-12s %-12s %-12s %-12s %-12s";
+                for(int i=0; i<phd.getCertificate().getG_energy().size(); i++) {
+                    String nuclide_name = phd.getCertificate().getNuclide_name().get(i);
+                    String half_life_time = phd.getCertificate().getHalf_life_time().get(i);
+                    String time_unit = phd.getCertificate().getTime_unit().get(i);
+                    String activity_nuclide_time_assay = String.valueOf(phd.getCertificate().getActivity_nuclide_time_assay().get(i));
+                    String uncertainty = String.valueOf(phd.getCertificate().getUncertainty().get(i));
+                    String g_energy = String.valueOf(phd.getCertificate().getG_energy().get(i));
+                    String g_intensity = String.valueOf(phd.getCertificate().getG_intensity().get(i));
+                    String electron_decay_mode = phd.getCertificate().getElectron_decay_mode().get(i);
+                    String maximum_energy = String.valueOf(phd.getCertificate().getMaximum_energy().get(i));
+                    String intensity_b_particle = String.valueOf(phd.getCertificate().getIntensity_b_particle().get(i));
+                    spectrum.append(rowFormat(certificate, nuclide_name, half_life_time, time_unit, activity_nuclide_time_assay, uncertainty, g_energy, g_intensity, electron_decay_mode, maximum_energy, intensity_b_particle));
+                    spectrum.append(System.lineSeparator());
+                }
             }
         }
 
@@ -4402,14 +4405,16 @@ public class GammaFileUtil extends AbstractLogOrReport {
         //换行
         spectrum.append(System.lineSeparator());
         GEnergyBlock g_ener = phd.getUsedEnerKD();
-        for(int i=0; i<g_ener.getG_energy().size(); i++) {
-            String g_energy = RightFill(String.format("%.9f", g_ener.getG_energy().get(i)), 16);
-            String centroid_channel = RightFill(String.format("%.9f", g_ener.getCentroid_channel().get(i)), 16);
-            String uncertainty = RightFill(String.format("%.9f", g_ener.getUncertainty().get(i).isNaN() ? 0.5 : g_ener.getUncertainty().get(i)), 16);
-            String energy = "%s %s %s";
-            spectrum.append(rowFormat(energy, g_energy, centroid_channel, uncertainty));
-            //换行
-            spectrum.append(System.lineSeparator());
+        if (Objects.nonNull(g_ener)) {
+            for(int i=0; i<g_ener.getG_energy().size(); i++) {
+                String g_energy = RightFill(String.format("%.9f", g_ener.getG_energy().get(i)), 16);
+                String centroid_channel = RightFill(String.format("%.9f", g_ener.getCentroid_channel().get(i)), 16);
+                String uncertainty = RightFill(String.format("%.9f", g_ener.getUncertainty().get(i).isNaN() ? 0.5 : g_ener.getUncertainty().get(i)), 16);
+                String energy = "%s %s %s";
+                spectrum.append(rowFormat(energy, g_energy, centroid_channel, uncertainty));
+                //换行
+                spectrum.append(System.lineSeparator());
+            }
         }
 
         // #g_Resolution
@@ -4417,14 +4422,16 @@ public class GammaFileUtil extends AbstractLogOrReport {
         //换行
         spectrum.append(System.lineSeparator());
         GResolutionBlock g_reso = phd.getUsedResoKD();
-        for(int i=0; i<g_reso.getFWHM().size(); i++) {
-            String g_energy = RightFill(String.format("%.9f", g_reso.getG_energy().get(i)), 16);
-            String fwhm = RightFill(String.format("%.9f", g_reso.getFWHM().get(i)), 16);
-            String uncertainty = RightFill(String.format("%.9f", g_reso.getUncertainty().get(i).isNaN() ? 0.5 : g_reso.getUncertainty().get(i)), 16);
-            String reso = "%s %s %s";
-            spectrum.append(rowFormat(reso, g_energy, fwhm, uncertainty));
-            //换行
-            spectrum.append(System.lineSeparator());
+        if (Objects.nonNull(g_reso)) {
+            for(int i=0; i<g_reso.getFWHM().size(); i++) {
+                String g_energy = RightFill(String.format("%.9f", g_reso.getG_energy().get(i)), 16);
+                String fwhm = RightFill(String.format("%.9f", g_reso.getFWHM().get(i)), 16);
+                String uncertainty = RightFill(String.format("%.9f", g_reso.getUncertainty().get(i).isNaN() ? 0.5 : g_reso.getUncertainty().get(i)), 16);
+                String reso = "%s %s %s";
+                spectrum.append(rowFormat(reso, g_energy, fwhm, uncertainty));
+                //换行
+                spectrum.append(System.lineSeparator());
+            }
         }
 
         // #g_Efficiency
@@ -4432,29 +4439,33 @@ public class GammaFileUtil extends AbstractLogOrReport {
         //换行
         spectrum.append(System.lineSeparator());
         GEfficiencyBlock g_effi = phd.getUsedEffiKD();
-        for(int i=0; i<g_effi.getEfficiency().size(); i++) {
-            String g_energy = RightFill(String.format("%.9f", g_effi.getG_energy().get(i)), 16);
-            String g_efficiency = RightFill(String.format("%.9f", g_effi.getEfficiency().get(i)), 16);
-            String uncertainty = RightFill(String.format("%.9f", g_effi.getUncertainty().get(i).isNaN() ? 0.5 : g_effi.getUncertainty().get(i)), 16);
-            String efficiency = "%s %s %s";
-            spectrum.append(rowFormat(efficiency, g_energy, g_efficiency, uncertainty));
-            spectrum.append(System.lineSeparator());
+        if (Objects.nonNull(g_effi)) {
+            for(int i=0; i<g_effi.getEfficiency().size(); i++) {
+                String g_energy = RightFill(String.format("%.9f", g_effi.getG_energy().get(i)), 16);
+                String g_efficiency = RightFill(String.format("%.9f", g_effi.getEfficiency().get(i)), 16);
+                String uncertainty = RightFill(String.format("%.9f", g_effi.getUncertainty().get(i).isNaN() ? 0.5 : g_effi.getUncertainty().get(i)), 16);
+                String efficiency = "%s %s %s";
+                spectrum.append(rowFormat(efficiency, g_energy, g_efficiency, uncertainty));
+                spectrum.append(System.lineSeparator());
+            }
         }
 
         // #TotalEff
-        if(phd.getUsedTotEKD().getG_energy().size() > 0) {
-            spectrum.append("#TotalEff");
-            //换行
-            spectrum.append(System.lineSeparator());
-            TotaleffBlock g_totE = phd.getUsedTotEKD();
-            for(int i=0; i<g_totE.getRecord_count(); i++) {
-                String g_energy = RightFill(String.format("%.9f", g_totE.getG_energy().get(i)), 16);
-                String total_efficiency = RightFill(String.format("%.9f", g_totE.getTotal_efficiency().get(i)), 16);
-                String uncertainty = RightFill(String.format("%.9f", g_totE.getUncertainty().get(i).isNaN() ? 0.5 : g_totE.getUncertainty().get(i)), 16);
-                String totalEff = "%s %s %s";
-                spectrum.append(rowFormat(totalEff, g_energy, total_efficiency, uncertainty));
+        TotaleffBlock g_totE = phd.getUsedTotEKD();
+        if (Objects.nonNull(g_totE)) {
+            if(g_totE.getG_energy().size() > 0) {
+                spectrum.append("#TotalEff");
                 //换行
                 spectrum.append(System.lineSeparator());
+                for(int i=0; i<g_totE.getRecord_count(); i++) {
+                    String g_energy = RightFill(String.format("%.9f", g_totE.getG_energy().get(i)), 16);
+                    String total_efficiency = RightFill(String.format("%.9f", g_totE.getTotal_efficiency().get(i)), 16);
+                    String uncertainty = RightFill(String.format("%.9f", g_totE.getUncertainty().get(i).isNaN() ? 0.5 : g_totE.getUncertainty().get(i)), 16);
+                    String totalEff = "%s %s %s";
+                    spectrum.append(rowFormat(totalEff, g_energy, total_efficiency, uncertainty));
+                    //换行
+                    spectrum.append(System.lineSeparator());
+                }
             }
         }
 
@@ -4462,44 +4473,60 @@ public class GammaFileUtil extends AbstractLogOrReport {
         spectrum.append("#g_Spectrum");
         //换行
         spectrum.append(System.lineSeparator());
-        String spectrumData = "%s %s";
-        String num_g_channel = RightFill(String.valueOf(phd.getSpec().getNum_g_channel()), 5);
-        String g_energy_span = RightFill(String.valueOf(phd.getSpec().getG_energy_span()), 4);
-        spectrum.append(rowFormat(spectrumData, num_g_channel, g_energy_span));
-        //换行
-        spectrum.append(System.lineSeparator());
-        int i=0;
-        int j = (int) phd.getSpec().getBegin_channel();
-        int len = phd.getSpec().getCounts().size();
-        for(; i<len-4; i+=5,j+=5) {
-            String spectrumData2 = "%s %s %s %s %s %s";
-            String number1 = RightFill(String.valueOf(j), 5);
-            String number2 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i)), 10);
-            String number3 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 1)), 10);
-            String number4 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 2)), 10);
-            String number5 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 3)), 10);
-            String number6 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 4)), 10);
-            spectrum.append(rowFormat(spectrumData2, number1, number2, number3, number4, number5, number6));
+        GSpectrumBlock spec = phd.getSpec();
+        if (Objects.nonNull(spec)) {
+            String spectrumData = "%s %s";
+            String num_g_channel = RightFill(String.valueOf(phd.getSpec().getNum_g_channel()), 5);
+            String g_energy_span = RightFill(String.valueOf(phd.getSpec().getG_energy_span()), 4);
+            spectrum.append(rowFormat(spectrumData, num_g_channel, g_energy_span));
             //换行
             spectrum.append(System.lineSeparator());
-        }
-        if(i < len) {
-            String spectrumData3 = "%s %s";
-            String number1 = RightFill(String.valueOf(j), 5);
-            String number2 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i)), 10);
-            spectrum.append(rowFormat(spectrumData3, number1, number2));
-            for(i = i+1; i < phd.getSpec().getNum_g_channel(); ++i) {
-                String spectrumData4 = " %s";
-                String number3 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i)), 10);
-                spectrum.append(rowFormat(spectrumData4, number3));
+            int i=0;
+            int j = (int) phd.getSpec().getBegin_channel();
+            int len = phd.getSpec().getCounts().size();
+            for(; i<len-4; i+=5,j+=5) {
+                String spectrumData2 = "%s %s %s %s %s %s";
+                String number1 = RightFill(String.valueOf(j), 5);
+                String number2 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i)), 10);
+                String number3 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 1)), 10);
+                String number4 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 2)), 10);
+                String number5 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 3)), 10);
+                String number6 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i + 4)), 10);
+                spectrum.append(rowFormat(spectrumData2, number1, number2, number3, number4, number5, number6));
+                //换行
+                spectrum.append(System.lineSeparator());
+            }
+            if(i < len) {
+                String spectrumData3 = "%s %s";
+                String number1 = RightFill(String.valueOf(j), 5);
+                String number2 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i)), 10);
+                spectrum.append(rowFormat(spectrumData3, number1, number2));
+                for(i = i+1; i < phd.getSpec().getNum_g_channel(); ++i) {
+                    String spectrumData4 = " %s";
+                    String number3 = RightFill(String.valueOf(phd.getSpec().getCounts().get(i)), 10);
+                    spectrum.append(rowFormat(spectrumData4, number3));
+                }
+                spectrum.append(System.lineSeparator());
             }
-            spectrum.append(System.lineSeparator());
         }
         spectrum.append("STOP");
         spectrum.append(System.lineSeparator());
         return spectrum.toString();
     }
 
+    public ChartData CreateTempBaseLine(String color, String name, BaseControls m_baseCtrl) {
+        ChartData cData = new ChartData();
+        cData.setColor(color);
+        cData.setName(name);
+        for(int i=0; i<m_baseCtrl.getBaseline().size(); ++i) {
+            SeriseData seriseData = new SeriseData();
+            seriseData.setX(i+1);
+            seriseData.setY(m_baseCtrl.getBaseline().get(i));
+            cData.getPointlist().add(seriseData);
+        }
+        return cData;
+    }
+
     public List<ShapeData> CreateShapeCP(BaseControls baseControls) {
         List<ShapeData> shapes = new LinkedList<>();
         for(int i=0; i<baseControls.getXCtrl().size(); ++i) {